Key publications:

1 / 8
DME Bowdish, L Rossi, M Loeb, J Johnstone, LP Schenck, M Fontes, MG Surette, FJ Whelan. The impact of respiratory infections and probiotic use on the nasal microbiota of frail residents in long-term care homes. (2023). ERJ Open Research, DOI: 10.1183/23120541.00212-2023.
2 / 8
FJ Whelan, RJ Hall, JO McInerney. Evidence for selection in a prokaryote pangenome. (2021). Molecular Biology & Evolution, msab139.
3 / 8
FJ Whelan, M Rusilowicz, JO McInerney. Coinfinder: detecting significant associations and dissociations in pangenomes. (2020). Microbial Genomics 6 (3).
4 / 8
FJ Whelan, B Waddell, SA Syed, S Shekarriz, HR Rabin, MD Parkins, MG Surette. Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota. (2020). Nature Microbiology 5 (2), 379-390.
5 / 8
FJ Whelan, AA Heirali, L Rossi, HR Rabin, MD Parkins, MG Surette. Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis. PloS one 12 (3), e0172811.
6 / 8
FJ Whelan, MG Surette. Clinical Insights into Pulmonary Exacerbations in Cystic Fibrosis from the Microbiome. What Are We Missing? Annals of the American Thoracic Society 12 (Supplement 2), S207-S211.
7 / 8
FJ Whelan, CP Verschoor, JC Stearns, L Rossi, K Luinstra, M Loeb, M Smieja, J Johnstone, MG Surette, DME Bowdish. The Loss of Topography in the Microbial Communities of the Upper Respiratory Tract in the Elderly. Annals of the American Thoracic Society 11 (4), 513-521.
8 / 8
FJ Whelan, CJ Meehan, GB Golding, BJ McConkey, DME Bowdish. The evolution of the class A scavenger receptors. BMC evolutionary biology 12 (1), 1-11.

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